PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G20520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 442aa    MW: 45418.3 Da    PI: 6.4301
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G20520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.6e-3775174694
              TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg... 88 
                       r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++         ++sssss      g   
  OPUNC08G20520.1  75 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriPTQSSSSS------Gpas 162
                      6999********************************************************666663333222222211112222......1222 PP

              TCP  89 .......kaaksa 94 
                             + ++++
  OPUNC08G20520.1 163 savvdgeE-SSAK 174
                      22233221.1111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3077168IPR005333Transcription factor, TCP
PROSITE profilePS5136927.38177131IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEAEAQAQDK AEEEEGTRQQ HAQAGPVGAA GVGGGGGGGP AAMAMSAIPM NSWLVPKPEP  60
VEFFGGMAVV RKPPPRNRDR HTKVEGRGRR IRMPAACAAR IFQLTRELGH KSDGETIRWL  120
LQQSEPAIIA ATGTGTVPAI ATTVDGVLRI PTQSSSSSGP ASSAVVDGEE SSAKRRRKLQ  180
PTRAVAGASP LATAAPAAYY PVIADPLLQG SGGAAISVQS GLAPITATGA PQGLVPVFAV  240
PATGSPAVAG GNRMIPQATA VWMVPQPAGA AGAGNQPTQF WAIQSAPQLV NFAGAQFPTA  300
INVADFQQQQ QQPVSTTIVQ NSNSGEHPVH MHFSGADSHE QQRRGRKEGN SGVVDHPEED  360
EDDDDDEPVS DSSPEERDGE RPARACGGTR GALTHTAGAG RWDQAGGGSG GAPGGPKWWC  420
GGSKGGLADR AVARVTAWPS RD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648330.10.0PREDICTED: transcription factor PCF2
SwissprotQ6ZBH60.0PCF2_ORYSJ; Transcription factor PCF2
SwissprotA2YXQ10.0PCF2_ORYSI; Transcription factor PCF2
TrEMBLA0A0E0LXL00.0A0A0E0LXL0_ORYPU; Uncharacterized protein
STRINGBGIOSGA026548-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os08g43160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-44TCP family protein